Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_190016_190282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

190016 - 190282

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCATG

5'SS Class:

major

3'SS Sequence:

TTTATTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTCTCTTTATTT

Flanking Amino Acid:

DEMIKMLPSQDECRVDEP*

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

68.8

43.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

87.9

0.85

0.7

83.6

31.3

Minor 5ss

37.1

-1.5

40.5

45.5

Minor BPS

69.4

0.69

1.5

83.14

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039853

189990 - 193605

3616

ENSAPLT00000002322

189196 - 192655

3460