Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_190971_191376_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

190971 - 191376

Intron Length:

406

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TAATTTTTCACT

Flanking Amino Acid:

TSDEGEVYVSEGGDRMAQVL

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

0.82

0.8

24.9

Major PPT

90.2

0.9

0.7

88.4

28.7

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

60.8

0.42

1.7

77.26

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039853

189990 - 193605

3616

ENSAPLT00000002322

189196 - 192655

3460