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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1912647_1913205_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1912647 - 1913205
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCCG
5'SS Class:
major
3'SS Sequence:
TCCCACCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAA
U12 Branch Point Sequence:
CCTCTCCCACCC
Flanking Amino Acid:
TLDKEPKSIEDVPEWNFDGS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
57.9
46.7
Major BPS
50.7
0.02
1.2
62.1
35.8
Major PPT
68.3
0.41
0.8
60.8
29
Minor 5ss
36.6
-1.5
3.3
48.4
47.3
Minor BPS
40.2
-0.7
2
47.95
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014305
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014914
1912471 - 1917555
5085