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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1913368_1914523_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1913368 - 1914523
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGGGTCTGACCG
Flanking Amino Acid:
EVLKYNRKPAETNLRHTCKK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
70.9
0.47
0.8
64.1
31.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
44.8
-0.5
1.9
48.09
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014305
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014914
1912471 - 1917555
5085