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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1915631_1916547_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1915631 - 1916547
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TCCCCCACAACA
Flanking Amino Acid:
GTNAEVMPSQWEFQVGPCEG
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
61.1
0.28
1
67
29.8
Major PPT
84.9
0.79
0.7
76.7
31.9
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
49.3
-0
1.9
62.21
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014305
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014914
1912471 - 1917555
5085