Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_192249_192568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

192249 - 192568

Intron Length:

320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACATGC

5'SS Class:

major

3'SS Sequence:

TCTATGCTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCTAT

U12 Branch Point Sequence:

GTTCTCTGGACT

Flanking Amino Acid:

AGAAGLDRSKIAGKWYVVAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

62.9

38.7

Major BPS

53.7

0.09

1.3

54.1

41.5

Major PPT

69.1

0.43

1.1

61.6

44.4

Minor 5ss

38.4

-1.3

50.9

45.7

Minor BPS

61.4

0.44

1.5

78.18

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039853

189990 - 193605

3616

ENSAPLT00000002322

189196 - 192655

3460