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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_199838_203239_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
199838 - 203239
Intron Length:
3402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
CGGCTCAGCTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCAGCACTGACT
Flanking Amino Acid:
DSADEFHVLNAPARLGLGKA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
58
0.18
1
54.4
40.2
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
43.8
-0.4
2
57.6
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000622
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000882
197503 - 205560
8058