Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2036112_2037525_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2036112 - 2037525

Intron Length:

1414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAAAAGG

5'SS Class:

major

3'SS Sequence:

GCTTTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTGGGTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

59.7

45.1

Major BPS

82.1

0.8

71.6

36.4

Major PPT

88.7

0.87

0.7

83.9

Minor 5ss

31.8

-2.1

31.8

42.3

Minor BPS

47.1

-0.1

2.1

66.59

45.3

Associated Gene:

Gene:

EHMT1

Ensembl Gene ID:

ENSAPLG00000012216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012807

2035934 - 2075949

40016