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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2045449_2048130_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2045449 - 2048130
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTTAATT
Flanking Amino Acid:
CMATESVDNELGRCTNSVVK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78
0.63
0.9
68.8
37.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
83.1
1.12
1
93.31
27.9

Associated Gene:

Gene:
EHMT1
Ensembl Gene ID:
ENSAPLG00000012216
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012807
2035934 - 2075949
40016