Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2045449_2049790_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2045449 - 2049790

Intron Length:

4342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTGGTTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTGAC

U12 Branch Point Sequence:

AAGGTGTGAATG

Flanking Amino Acid:

CMATESVDNEGTFMECQPES

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

69.2

36.8

Major BPS

63.6

0.34

1.2

55.1

42.1

Major PPT

73.1

0.52

0.9

70.2

41.3

Minor 5ss

30.3

-2.3

3.5

Minor BPS

39.8

-0.9

2.1

38.8

Associated Gene:

Gene:

EHMT1

Ensembl Gene ID:

ENSAPLG00000012216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041682

2041282 - 2075949

34668