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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_204850_205420_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
204850 - 205420
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TCTCCCCGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCATCCTGCACC
Flanking Amino Acid:
QSLVVSTFKKLDGMCWEIRQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
70.8
34.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.7
0.56
0.9
68.5
31.9
Minor 5ss
31.8
-2.1
3.4
49.9
46.4
Minor BPS
49.7
-0
2
59.79
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000622
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000882
197503 - 205560
8058