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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2050018_2050763_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2050018 - 2050763
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTCTCT
Flanking Amino Acid:
VEGRADTTTGSGTGTRLSEE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
42.7
-0.4
3.5
74.5
43.2

Associated Gene:

Gene:
EHMT1
Ensembl Gene ID:
ENSAPLG00000012216
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041682
2041282 - 2075949
34668
ENSAPLT00000012807
2035934 - 2075949
40016