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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2102121_2108526_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2102121 - 2108526
Intron Length:
6406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATCTCCTTGACA
Flanking Amino Acid:
GDKTPMSERLDDTEPYFIGI
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
79
0.72
1
69
38.9
Major PPT
90.2
0.9
0.7
88.7
28.3
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
80
0.94
1.1
80.82
34.6

Associated Gene:

Gene:
CACNA1B
Ensembl Gene ID:
ENSAPLG00000005963
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020946
2102028 - 2375046
273019
ENSAPLT00000006711
2102028 - 2375046
273019
ENSAPLT00000030886
2102028 - 2375046
273019