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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_210897_212944_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
210897 - 212944
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCCGC
5'SS Class:
major
3'SS Sequence:
GCTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCCTATCAAGT
Flanking Amino Acid:
RVSREVPRHPAAVSWYDEFQ
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
54.2
45
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.1
0.72
0.8
73.1
37.3
Minor 5ss
31.7
-2.1
3.2
42
44.8
Minor BPS
45.7
-0.2
2
66.39
44.1

Associated Gene:

Gene:
FBXW5
Ensembl Gene ID:
ENSAPLG00000016400
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043040
210632 - 223596
12965
ENSAPLT00000039030
210632 - 223596
12965
ENSAPLT00000017119
210632 - 259917
49286