Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_216762_219314_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

216762 - 219314

Intron Length:

2553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTCCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

AATTCCCTGATT

Flanking Amino Acid:

GCLTYSPHQIGIKRILPHQM

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

0.42

1.1

57.3

41.7

Major PPT

74.6

0.55

72.6

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

63.9

0.52

1.6

79.3

36.4

Associated Gene:

Gene:

FBXW5

Ensembl Gene ID:

ENSAPLG00000016400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043040

210632 - 223596

12965

ENSAPLT00000039030

210632 - 223596

12965

ENSAPLT00000017119

210632 - 259917

49286