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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2199906_2202096_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2199906 - 2202096

Intron Length:

2191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCGCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CCTTGCTGACTA

Flanking Amino Acid:

RPLKLVSGIPSLQVVLKSIM

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

72.1

31.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

64.4

0.33

0.8

56.2

27.5

Minor 5ss

30.2

-2.3

3.1

36.2

34.2

Minor BPS

44.9

-0.3

2.1

55.19

44.5

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019

ENSAPLT00000006711

2102028 - 2375046

273019