Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_220898_221557_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

220898 - 221557

Intron Length:

660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTGATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

ATGTCCTTACTG

Flanking Amino Acid:

FLDVSRDFVASGAEDRHGYI

Intron Amino Acid Position:

506

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

36.6

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

71.1

0.47

65.6

40.1

Minor 5ss

35.1

-1.7

3.2

49.2

47.1

Minor BPS

0.27

1.7

65.36

43.1

Associated Gene:

Gene:

FBXW5

Ensembl Gene ID:

ENSAPLG00000016400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043040

210632 - 223596

12965

ENSAPLT00000039030

210632 - 223596

12965

ENSAPLT00000017119

210632 - 259917

49286