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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_221745_259140_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
221745 - 259140
Intron Length:
37396

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATAGGGGCAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTGCTTTGAAT
Flanking Amino Acid:
RSPRTVRIQQAKTNNTLLQR
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
69
41.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
49.5
-0
1.1
40.7
43.2
Minor 5ss
16.7
-3.8
3.4
21.5
37.5
Minor BPS
61.2
0.43
1.6
76.74
40

Associated Gene:

Gene:
FBXW5
Ensembl Gene ID:
ENSAPLG00000016400
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017119
210632 - 259917
49286