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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2228902_2241520_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2228902 - 2241520

Intron Length:

12619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTCTATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GCTTTCTTATTC

Flanking Amino Acid:

MLNLVLGVLSGEFAKERERV

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

40.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

78.3

0.64

0.7

72.8

25.5

Minor 5ss

31.8

-2.1

3.1

34.5

41.3

Minor BPS

60.5

0.31

1.6

66.16

40.1

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019

ENSAPLT00000006711

2102028 - 2375046

273019