Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2250460_2251123_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2250460 - 2251123

Intron Length:

664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTCGT

5'SS Class:

major

3'SS Sequence:

CATTCACTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAC

U12 Branch Point Sequence:

CTCCCATTCACT

Flanking Amino Acid:

KNAEEKSPLDGRAASEGPIQ

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

47.6

Major BPS

69.9

0.5

31.5

Major PPT

68.6

0.42

66.6

39.3

Minor 5ss

-1.7

3.3

50.1

46.2

Minor BPS

49.6

0.05

2.1

70.32

46.2

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019

ENSAPLT00000006711

2102028 - 2375046

273019