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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2257242_2264534_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2257242 - 2264534
Intron Length:
7293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTGGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTAATTTAATC
Flanking Amino Acid:
DQPEKLTTALYFAEFVFLGL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.8
0.51
0.9
65
41.2
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
56.1
0.17
1.5
62.17
37.5

Associated Gene:

Gene:
CACNA1B
Ensembl Gene ID:
ENSAPLG00000005963
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030886
2102028 - 2375046
273019
ENSAPLT00000020946
2102028 - 2375046
273019
ENSAPLT00000006711
2102028 - 2375046
273019