Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2277585_2283758_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

2277585 - 2283758

Intron Length:

6174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTATCCTTG

5'SS Class:

strong_minor

3'SS Sequence:

TGCTCCCCAACAG|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

TTTTCCTTAGCT

Flanking Amino Acid:

YFIVLTLFGNYTLLNVFLAI

Intron Amino Acid Position:

612

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

48.9

-0

1.3

46.6

44.1

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

68.4

0.42

0.9

62.7

33.3

Minor 5ss

91.9

1.41

28.3

Minor BPS

1.21

1.3

100.3

27.8

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019

ENSAPLT00000006711

2102028 - 2375046

273019