Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2296086_2304685_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2296086 - 2304685

Intron Length:

8600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGTTGC

5'SS Class:

major

3'SS Sequence:

CTCCCCTCCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

TTGATACTAACT

Flanking Amino Acid:

RSSSVSSVNSPKQQNSSKSK

Intron Amino Acid Position:

691

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.3

60.5

41.4

Major BPS

76.8

0.67

0.9

75.9

Major PPT

70.1

0.45

0.7

65.1

23.5

Minor 5ss

-1.5

2.9

48.1

41.3

Minor BPS

49.9

0.07

74.51

41.8

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019