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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2339484_2341210_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2339484 - 2341210

Intron Length:

1727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

CTGTCATTAATA

Flanking Amino Acid:

LLWTFVQSFKALPYVCLLIA

Intron Amino Acid Position:

1518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

84.1

26.5

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

80.8

0.69

0.7

75.8

26.4

Minor 5ss

30.9

-2.2

3.5

46.6

48.7

Minor BPS

66.3

0.51

1.6

72.22

40.3

Associated Gene:

Gene:

CACNA1B

Ensembl Gene ID:

ENSAPLG00000005963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030886

2102028 - 2375046

273019

ENSAPLT00000020946

2102028 - 2375046

273019

ENSAPLT00000006711

2102028 - 2375046

273019