Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_236257_246563_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

236257 - 246563

Intron Length:

10307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATATC

5'SS Class:

strong_major

3'SS Sequence:

GATTCTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

GATTCTTTTACA

Flanking Amino Acid:

TWKGTIKEYEAHDEVCPKFP

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

87.7

26.2

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

82.8

0.74

0.9

76.3

37.4

Minor 5ss

39.6

-1.2

2.9

43.3

Minor BPS

66.5

0.51

1.6

73.2

38.6

Associated Gene:

Gene:

TRAF2

Ensembl Gene ID:

ENSAPLG00000016230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016945

227574 - 248228

20655