Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2429363_2430097_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2429363 - 2430097

Intron Length:

735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAG

U12 Branch Point Sequence:

CTGGTGTTAAGG

Flanking Amino Acid:

RGLAGPKGDKGYPGAMGRMG

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.6

12.4

Major BPS

60.4

0.26

1.6

69.7

44.2

Major PPT

76.4

0.59

0.7

69.6

31.2

Minor 5ss

36.2

-1.6

2.9

50.6

45.9

Minor BPS

41.9

-0.7

2.3

45.44

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018083

2425365 - 2456619

31255

ENSAPLT00000017187

2426372 - 2456801

30430

ENSAPLT00000011420

2425365 - 2456619

31255