Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2430218_2433338_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2430218 - 2433338

Intron Length:

3121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

ATTCTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

GATTTTTTGACA

Flanking Amino Acid:

NSREDWLTFTQSPFYQLLHA

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.3

54.4

44.7

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

87.6

0.85

0.7

85.2

28.8

Minor 5ss

28.5

-2.5

3.1

35.7

41.3

Minor BPS

68.1

0.56

1.1

71.23

34.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018083

2425365 - 2456619

31255

ENSAPLT00000017187

2426372 - 2456801

30430

ENSAPLT00000011420

2425365 - 2456619

31255