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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2433378_2433497_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2433378 - 2433497
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCATC
Flanking Amino Acid:
FYQLLHAGWPRKPGAPGPPG
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.5
0.69
0.8
73.3
36.2
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
63.8
0.42
1.7
73.34
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255
ENSAPLT00000018083
2425365 - 2456619
31255