Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2433552_2434203_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2433552 - 2434203

Intron Length:

652

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGCACG

5'SS Class:

major

3'SS Sequence:

TGTTTGTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTGAT

U12 Branch Point Sequence:

GTTTGCTGACTT

Flanking Amino Acid:

PGHPGKAGVPGPSGEPGEPG

Intron Amino Acid Position:

349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

66.6

44.7

Major BPS

0.62

65.3

41.5

Major PPT

77.9

0.63

72.9

42.2

Minor 5ss

40.2

-1.1

2.8

51.1

Minor BPS

0.01

2.1

73.4

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017187

2426372 - 2456801

30430

ENSAPLT00000011420

2425365 - 2456619

31255

ENSAPLT00000018083

2425365 - 2456619

31255