Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2440603_2440872_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2440603 - 2440872

Intron Length:

270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGAGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGACAT

U12 Branch Point Sequence:

CTGGCCGTGACA

Flanking Amino Acid:

KGDLGARGDKGPHGAQGAAG

Intron Amino Acid Position:

604

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

66.3

39.8

Major BPS

49.9

-0

1.4

60.7

45.9

Major PPT

68.6

0.42

67.3

32.9

Minor 5ss

28.7

-2.4

3.4

38.8

46.3

Minor BPS

48.6

-0.1

2.2

61.55

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017187

2426372 - 2456801

30430

ENSAPLT00000011420

2425365 - 2456619

31255

ENSAPLT00000018083

2425365 - 2456619

31255