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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2442049_2442367_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2442049 - 2442367
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCACC
5'SS Class:
major
3'SS Sequence:
GTGTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TCTGTGTGAATT
Flanking Amino Acid:
AGLNSSEGPKGSRGPDGPKG
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
69.7
41.3
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
64.7
0.33
1
60.2
45
Minor 5ss
36.1
-1.6
2.7
44.7
42.9
Minor BPS
46.8
-0.1
2.2
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018083
2425365 - 2456619
31255
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255