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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2449843_2449971_F

Intron Information:

Intron Rank:
41
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2449843 - 2449971
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GACCCCCAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTTTCTTGACC
Flanking Amino Acid:
AGPAGARGRSGSTGLRGPPG
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
54.5
0.1
1
47.5
34.1
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
84.8
1.08
0.9
89.41
24.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018083
2425365 - 2456619
31255
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255