About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2451520_2451635_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2451520 - 2451635
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
AGAPGSSGAEGLMGAKGEPG
Intron Amino Acid Position:
1150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76
0.58
0.8
74.6
35.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255
ENSAPLT00000018083
2425365 - 2456619
31255