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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2451967_2452089_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2451967 - 2452089
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
ATGTCCAAAACA
Flanking Amino Acid:
QGQKGRKGEKGDVGREGQEG
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
56
0.19
2
70.75
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018083
2425365 - 2456619
31255
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255