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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2454286_2454369_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2454286 - 2454369
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
TCCCCCTGAGGC
Flanking Amino Acid:
RGLPGLSGKPGLSGQKGLKG
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
44.6
-0.4
1.9
52.44
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010947
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017187
2426372 - 2456801
30430
ENSAPLT00000011420
2425365 - 2456619
31255
ENSAPLT00000018083
2425365 - 2456619
31255