Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2464205_2464829_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2464205 - 2464829

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGGG

5'SS Class:

major

3'SS Sequence:

TCGGTGCCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

GCCCCTCTAACC

Flanking Amino Acid:

LQSVMKDIMQAVKEAAVQRK

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

60.1

42.1

Major BPS

72.3

0.55

73.3

28.9

Major PPT

68.8

0.42

58.2

43.1

Minor 5ss

27.2

-2.6

3.7

37.3

47.4

Minor BPS

49.7

-0

1.7

57.02

41.6

Associated Gene:

Gene:

NIBAN2

Ensembl Gene ID:

ENSAPLG00000011287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026810

2462141 - 2472156

10016

ENSAPLT00000023933

2462811 - 2471962

9152

ENSAPLT00000046971

2462141 - 2472156

10016

ENSAPLT00000020136

2462811 - 2472156

9346

ENSAPLT00000045164

2462141 - 2471962

9822

ENSAPLT00000011769

2462141 - 2474507

12367

ENSAPLT00000029396

2463306 - 2472156

8851