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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2464942_2465052_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2464942 - 2465052
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GCCCCGCTGACC
Flanking Amino Acid:
LKKLAPTCKGELAKFQELIF
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.1
40.1
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
72
0.49
0.8
65.4
30.5
Minor 5ss
29.4
-2.4
3.3
30
43
Minor BPS
41.6
-0.6
2.2
48.7
41.4

Associated Gene:

Gene:
NIBAN2
Ensembl Gene ID:
ENSAPLG00000011287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023933
2462811 - 2471962
9152
ENSAPLT00000046971
2462141 - 2472156
10016
ENSAPLT00000020136
2462811 - 2472156
9346
ENSAPLT00000045164
2462141 - 2471962
9822
ENSAPLT00000011769
2462141 - 2474507
12367
ENSAPLT00000029396
2463306 - 2472156
8851
ENSAPLT00000026810
2462141 - 2472156
10016