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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2466400_2466592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2466400 - 2466592
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCC
Flanking Amino Acid:
SKEHLCSKIRAFVLPKAEIC
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69
0.43
1
60.9
40.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
42.9
-0.5
2.2
49.56
47

Associated Gene:

Gene:
NIBAN2
Ensembl Gene ID:
ENSAPLG00000011287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020136
2462811 - 2472156
9346
ENSAPLT00000045164
2462141 - 2471962
9822
ENSAPLT00000011769
2462141 - 2474507
12367
ENSAPLT00000029396
2463306 - 2472156
8851
ENSAPLT00000026810
2462141 - 2472156
10016
ENSAPLT00000023933
2462811 - 2471962
9152
ENSAPLT00000046971
2462141 - 2472156
10016