Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_246663_247051_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

246663 - 247051

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TTTTCCATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTGTCGTTGATT

Flanking Amino Acid:

EGISVLETSSAFPDNAARRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

71.7

33.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

87.3

0.84

0.7

82.1

28.1

Minor 5ss

34.2

-1.8

3.2

45.6

43.6

Minor BPS

0.27

2.1

74.24

43.6

Associated Gene:

Gene:

TRAF2

Ensembl Gene ID:

ENSAPLG00000016230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021928

226574 - 248228

21655

ENSAPLT00000016945

227574 - 248228

20655