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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2467728_2470324_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2467728 - 2470324
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTCGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACTC
Flanking Amino Acid:
FQDCVRHCNNGISEDSKVEA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.7
0.49
0.8
62
34.8
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
41.2
-0.6
2.1
45.19
44.3

Associated Gene:

Gene:
NIBAN2
Ensembl Gene ID:
ENSAPLG00000011287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011769
2462141 - 2474507
12367
ENSAPLT00000029396
2463306 - 2472156
8851
ENSAPLT00000026810
2462141 - 2472156
10016
ENSAPLT00000023933
2462811 - 2471962
9152
ENSAPLT00000046971
2462141 - 2472156
10016
ENSAPLT00000020136
2462811 - 2472156
9346
ENSAPLT00000045164
2462141 - 2471962
9822