About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2470493_2471505_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2470493 - 2471505
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CTTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAG
U12 Branch Point Sequence:
TGCCCCTTCAGA
Flanking Amino Acid:
LRPGALREQTGVAPKSGNAA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.1
41.7
Major BPS
50.2
0.01
1.5
54.7
43.1
Major PPT
75.7
0.58
0.7
69.5
24.3
Minor 5ss
34.4
-1.8
2.8
38
40.8
Minor BPS
48.9
-0
2.1
61.26
44.7

Associated Gene:

Gene:
NIBAN2
Ensembl Gene ID:
ENSAPLG00000011287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045164
2462141 - 2471962
9822