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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2471166_2471505_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2471166 - 2471505
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TCTTTCTGCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCCCGCTCACCA
Flanking Amino Acid:
YGLVLYENKLAYERELPPRV
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.1
41.7
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
80.8
0.69
0.8
80.3
31.7
Minor 5ss
34.4
-1.8
2.8
38
40.8
Minor BPS
39.9
-0.7
2.1
44.11
44.6

Associated Gene:

Gene:
NIBAN2
Ensembl Gene ID:
ENSAPLG00000011287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023933
2462811 - 2471962
9152
ENSAPLT00000020136
2462811 - 2472156
9346
ENSAPLT00000046971
2462141 - 2472156
10016
ENSAPLT00000011769
2462141 - 2474507
12367
ENSAPLT00000029396
2463306 - 2472156
8851
ENSAPLT00000026810
2462141 - 2472156
10016