Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2471635_2474303_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2471635 - 2474303

Intron Length:

2669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTCAC

U12 Branch Point Sequence:

TCCCTGCCAGCC

Flanking Amino Acid:

GPQAQLLHRKVPLEDHVIYS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

31.7

Major BPS

46.8

-0.2

1.4

48.8

46.3

Major PPT

63.5

0.3

58.2

33.1

Minor 5ss

31.7

-2.1

3.3

42.5

44.5

Minor BPS

32.7

-1.3

2.2

39.95

39.5

Associated Gene:

Gene:

NIBAN2

Ensembl Gene ID:

ENSAPLG00000011287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011769

2462141 - 2474507

12367