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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2533516_2534138_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2533516 - 2534138
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGATAG
5'SS Class:
major
3'SS Sequence:
CCGTCATGATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
ATGTCCTTCACC
Flanking Amino Acid:
MPGFVEIKLATWREDLSSFT
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
64.7
37.9
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
45.4
-0.2
1.7
51.1
41.8
Minor 5ss
33.2
-1.9
3
37.5
40.6
Minor BPS
69.8
0.61
1.7
76.65
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021787
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040485
2533484 - 2536715
3232