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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2615817_2616364_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2615817 - 2616364
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTGCTTCATC
Flanking Amino Acid:
MLTDSTSFAKCLEEIKLGKQ
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.4
0.37
1
64.1
41.5
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
54
0.11
2.2
69.44
42.9

Associated Gene:

Gene:
TMEM268
Ensembl Gene ID:
ENSAPLG00000015381
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016039
2615077 - 2628217
13141