About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2622460_2623658_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2622460 - 2623658
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGGGCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GTTTTCTGAGCA
Flanking Amino Acid:
SRAFQIAIAVIFYVSLWTNI
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
71
0.47
1
64.3
41.5
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
60
0.31
1.7
73.01
38.5

Associated Gene:

Gene:
TMEM268
Ensembl Gene ID:
ENSAPLG00000015381
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018447
2612231 - 2628370
16140
ENSAPLT00000016039
2615077 - 2628217
13141
ENSAPLT00000046048
2615769 - 2628370
12602
ENSAPLT00000032236
2614292 - 2628217
13926