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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2624605_2626168_F

Intron Information:

Intron Rank:
8
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
2624605 - 2626168
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCCCCCGTCCCAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CCTTCCTTAACC
Flanking Amino Acid:
VLDGPHSILQLWFVHFSPER
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
65.7
0.35
0.9
56.1
33.6
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
83.8
1.05
1.1
82.21
38.6

Associated Gene:

Gene:
TMEM268
Ensembl Gene ID:
ENSAPLG00000015381
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018447
2612231 - 2628370
16140
ENSAPLT00000016039
2615077 - 2628217
13141
ENSAPLT00000046048
2615769 - 2628370
12602
ENSAPLT00000032236
2614292 - 2628217
13926