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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2626250_2627020_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2626250 - 2627020
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
CTGCCCCAAACT
Flanking Amino Acid:
HLEELRQTRESGLRHSLDQL
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
49
0.01
2.1
69.97
46.5

Associated Gene:

Gene:
TMEM268
Ensembl Gene ID:
ENSAPLG00000015381
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046048
2615769 - 2628370
12602
ENSAPLT00000032236
2614292 - 2628217
13926
ENSAPLT00000018447
2612231 - 2628370
16140
ENSAPLT00000016039
2615077 - 2628217
13141