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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2627204_2628037_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2627204 - 2628037
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TAGACACTGACG
Flanking Amino Acid:
LRLIPEGPPEVMAQQLLVIF
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
77.2
0.61
0.9
68.3
37.4
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
44.4
-0.5
2
50.62
43

Associated Gene:

Gene:
TMEM268
Ensembl Gene ID:
ENSAPLG00000015381
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016039
2615077 - 2628217
13141
ENSAPLT00000046048
2615769 - 2628370
12602
ENSAPLT00000032236
2614292 - 2628217
13926
ENSAPLT00000018447
2612231 - 2628370
16140