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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_263713_263797_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
263713 - 263797
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TCACGCCCAACA
Flanking Amino Acid:
VPVQSPSEFQIIFEITTRIW
Intron Amino Acid Position:
1291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.9
-0.5
2.2
54.97
43.2

Associated Gene:

Gene:
MAMDC4
Ensembl Gene ID:
ENSAPLG00000016046
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016742
261618 - 274458
12841